PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020936-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 360aa    MW: 40537 Da    PI: 10.3037
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020936-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.2e-32294351359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  NNU_020936-RA 294 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHS 351
                    9************************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.2E-17246290IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.2E-34280352IPR003657WRKY domain
PROSITE profilePS5081130.067287353IPR003657WRKY domain
SuperFamilySSF1182903.01E-27290351IPR003657WRKY domain
SMARTSM007744.0E-39292352IPR003657WRKY domain
PfamPF031061.7E-27294350IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEEVEEANRT AVESCHRVLS LISQSQDPVQ YRNLMVETGE AVSKFKRVVS LLSAGTGLGH  60
ARVRRLRKCQ SSFPLKIFLD NSSSSAKPLQ LLQPSFLESP VQEMVTVASA PKNPMQLPPR  120
IFMENPALET GSAAKNPLQL AQQTPPTHYQ FLQHQQQQQQ QQHQQQQRFQ LQQQQMKFQA  180
DMMYRRSNSG INLTFDNSSC TPTMSSNRSF ISSLSMDGSV ANLDGKAFHL IGAPQSSDRN  240
SQPITKRRCS SRDDGSVKCG SSGRCHCSKR RKHRVKRSIK VPAISNKLAD IPPDEYSWRK  300
YGQKPIKGSP HPRGYYKCSS MRGCPARKHV ERCLEDPSML IVTYEGEHNH SRVLSQSAHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-212883501071WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0812674e-92JQ081267.1 Gossypium hirsutum WRKY6 transcription factor (WRKY6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278127.10.0PREDICTED: probable WRKY transcription factor 21
RefseqXP_010278128.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-118WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLF6HVI71e-164F6HVI7_VITVI; Putative uncharacterized protein
STRINGVIT_14s0081g00560.t011e-164(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-117WRKY DNA-binding protein 21